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minSNPs: an R package for the derivation of resolution-optimised SNP sets from microbial genomic data [PeerJ]
Whole-genome sequencing of Burkholderia pseudomallei from an urban melioidosis hot spot reveals a fine-scale population structure and localised spatial clustering in the environment
Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages
SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets, BMC Research Notes
Comparison of two African rice species through a new pan-genomic approach on massive data
Molecular epidemiology of third-generation cephalosporin-resistant Enterobacteriaceae from Southeast Queensland, Australia
PDF) SPANDx: A genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets
Comparative genomics and antimicrobial resistance profiling of Elizabethkingia isolates reveals nosocomial transmission and in vitro susceptibility to fluoroquinolones, tetracyclines and trimethoprim-sulfamethoxazole
Metabolism of ʟ -arabinose converges with virulence regulation to promote enteric pathogen fitness
Whole genome sequencing reveals extensive community-level transmission of group A Streptococcus in remote communities, Epidemiology & Infection
Using whole-genome sequencing and a pentaplex real-time PCR to characterize third-generation cephalosporin-resistant Enterobacteriaceae from Southeast Queensland, Australia
Comparative analysis of whole-genome sequencing pipelines to minimize false negative findings
Comparative Genomics and Antimicrobial Resistance Profiling of Elizabethkingia Isolates Reveal Nosocomial Transmission and In Vitro Susceptibility to Fluoroquinolones, Tetracyclines, and Trimethoprim-Sulfamethoxazole
Frontiers Machine Learning Approaches for Epidemiological Investigations of Food-Borne Disease Outbreaks
